Ach05g264551.2 May 08, 2015

Protein name	Ach05g264551.2

Alternative name	Putative DNA-binding protein ESCAROLA

Source	Annotation

Theoretical PI	6.68

Molecular weight	50177.7 Da

Gene name	Ach05g264551

Function

Description	Uncharacterized protein
PMID
Biological Process
Molecular Function
Cellular Component

Pathway

KEGG

COG

KOG

2e-52	180	At2g33620
2e-40	150	At4g12080
3e-43	159	At4g25320
4e-41	153	At5g51590
2e-40	152	At5g62260

Interaction

PPIs	0 protein interacts with Ach05g264551.2
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Sequences CDS download protein download

Sequences

MGWEPKMELL	IGFGKGFHGK	CGFLGDARKV	IDEMLEINTV	AWNSMIASYI	50
ENGMSEEALE	VAFRAPESAK	KACADPDPDP	VIDGRRANCN	LASLGRPQPY	100
FPYGHPSRDD	SRKTVESLGL	WFEGVVRVYG	ISMSTMDSYG	VVNEGVVQIN	150
NGNNNSGPQS	SQPSGGLISD	MHLAFTTEDG	AAVYKPVMPL	NSQLSSSAGV	200
GDGSALPRRK	RGRPKKYPYE	GDMSSLPPQP	PEASAAHRAS	GLASLPTTAK	250
KSRGRPLGSG	RKQQPLAIVG	LPGRELTAHV	ITVTAGEDVS	SKIMSFSQYG	300
RRGLCILSAN	GAISNVTLRH	PATSGGTVTY	EGRFEILSLS	GSYMLLEDGG	350
QRSRTGGLSV	TLAGPDGHVL	GGGVAGILTA	AAPVQNDSTS	RLSMGLFIKM	400
TTQAERLVVL	QVIVGCFIEG	EGELNSPIQA	DPLVTPPKLL	PGASSGGTLS	450
ESSGGPGSPI	NQSTGACNNS	NPLLGFSWQ			479

Length

479

Alternative splicing

There exists

Mutagenesis

Similar Protein

Paralog

Putative lysozyme-like protein	6e-045	178	Ach02g086691.2
Putative DNA-binding protein ESCAROLA	1e-069	260	Ach04g343631.1
DNA binding protein, putative	6e-042	169	Ach08g302651.1
Putative DNA-binding protein ESCAROLA	2e-043	173	Ach14g317401.2
Hypothetical protein	1e-044	177	Ach18g093181.2

GeneBank

putative DNA-binding protein ESCAROLA	7.7995e-66	222	XP_008237920.1
hypothetical protein PRUPE_ppa007321mg	2.95825e-65	221	XP_007209259.1
uncharacterized protein LOC103942430	6.89822e-63	214	XP_009350893.1
putative DNA-binding protein ESCAROLA	9.03829e-63	214	XP_002275328.1
putative DNA-binding protein ESCAROLA isoform X1	9.86584e-63	214	XP_008373377.1

Swiss Prot

Putative DNA-binding protein ESCAROLA

1.42605e-12

Q9S7C9

TrEMBL

Uncharacterized protein	1e-65	221	M5WMF5
Putative uncharacterized protein	3e-63	214	D7UDF0
AT hook motif DNA-binding family protein isoform 1	7e-63	213	A0A061FEZ3
Putative uncharacterized protein	2e-62	213	A5AT53
Uncharacterized protein	1e-61	210	A0A067KWX7

Arabidopsis

Predicted AT-hook DNA-binding family protein	5e-016	82.8	AT1G14490.1
Predicted AT-hook DNA-binding family protein	1e-011	68.6	AT1G20900.1
AT hook motif DNA-binding family protein	1e-039	161	AT1G63470.1
AT hook motif DNA-binding family protein	5e-035	145	AT1G63480.1
RNA-binding (RRM/RBD/RNP motifs) family protein	3e-012	70.5	AT1G76460.1

Tomato

AT-hook motif nuclear localized protein 1	2e-044	176	Solyc01g094460.2
AT-hook motif nuclear localized protein 2	4e-046	182	Solyc02g038760.2
AT-hook motif nuclear localized protein 1	4e-043	172	Solyc03g007150.2
AT-hook motif nuclear localized protein 1	1e-040	163	Solyc08g008030.2
AT-hook motif nuclear localized protein 13	2e-044	176	Solyc08g077030.2

Expression

Subcellular location

Unclear

Expression at different developmental stages of three Actinidia species

Period: 20DAP Period: 120DAP Period: 127DAP

Structure

Coils
PDB

Family & Domains

Gene3D

Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2

276-385

3.30.1330.80

Pfam

PPR repeat	40-62	PF01535
Domain of unknown function	276-391	PF03479

SUPFAM

AF0104/ALDC/Ptd012-like superfamily

275-385

SSF117856

HAMAP

PIRSF

PRINTS

Prosite

Pentatricopeptide (PPR) repeat profile

38-72

PS51375

Smart

TIGRFAM

Publications

Crowhurst, R. N., A. P. Gleave, et al. (2008). Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9: 351. PMID: 18655731

Fraser, L. G., G. K. Tsang, et al. (2009). A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes. BMC Genomics 10: 102. PMID: 19284545