Ach04g343631.1 May 08, 2015

Protein name	Ach04g343631.1

Alternative name	Putative DNA-binding protein ESCAROLA

Source	Annotation

Theoretical PI	10.13

Molecular weight	35491 Da

Gene name	Ach04g343631

Function

Description

Uncharacterized protein

PMID

Biological Process

multicellular organismal development

GO:0007275

Molecular Function

Cellular Component

Pathway

KEGG

COG

KOG

1e-80	249	At2g33620
1e-50	174	At2g45850
2e-52	179	At4g12080
3e-52	179	At4g25320
9e-51	176	At5g51590

Interaction

PPIs	0 protein interacts with Ach04g343631.1
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Sequences CDS download protein download

Sequences

MSGSETGGAV	MTTREPFTVA	SHSQPVMQNM	RLAYSADGAA	VYKPVGSSPP	50
PQSAASGGDG	TNEGQATGSL	MPHNLNVNLG	ETVKKKRGRP	RKYGPDGTMA	100
LALMPTPATT	AIPQAAGTFS	PPSHHTPTSG	GPVSPTSSKK	GRGRPPGSSK	150
KQQMEALGSA	GVGFTPHIIT	VKAGEDVSSK	IMSFSQHGPR	AVCVLSANGT	200
ISNVTLRQAA	TSGGTATYEG	RFEILSLSGS	FLLTEVGGQR	SRTGGLSVSL	250
AGPDGRVLGG	CVAGLLTAAS	PVQVIVGSFF	ADGRKESKPV	NHVEPLSAPP	300
KTTPGVGATG	ASSPPSRGTL	SESSGGPGRP	LKHRTGACNS	NPQGMLSMPW	350
R					351

Length

351

Alternative splicing

Not at the present moment

Mutagenesis

Similar Protein

Paralog

Putative DNA-binding protein ESCAROLA	9e-070	260	Ach05g264551.2
DNA binding protein, putative	1e-058	223	Ach08g302651.1
Putative DNA-binding protein ESCAROLA	1e-058	223	Ach14g317401.2
DNA binding protein, putative	1e-057	220	Ach18g072071.1
Hypothetical protein	1e-060	230	Ach18g093181.2

GeneBank

putative DNA-binding protein ESCAROLA	4.31043e-120	356	XP_002275328.1
hypothetical protein VITISV_030792	9.91505e-119	354	CAN64876.1
putative lysozyme-like protein	1.35041e-113	340	XP_010932105.1
putative lysozyme-like protein	2.18198e-113	340	XP_008787030.1
putative DNA-binding protein ESCAROLA	1.33138e-111	334	XP_010270554.1

Swiss Prot

Putative DNA-binding protein ESCAROLA

7.0778e-12

Q9S7C9

TrEMBL

Putative uncharacterized protein	1e-120	356	D7UDF0
Putative uncharacterized protein	1e-119	354	A5AT53
Uncharacterized protein	1e-112	335	B9GPN9
Uncharacterized protein	1e-110	330	M5WMF5
Uncharacterized protein	1e-106	319	M0SBI9

Arabidopsis

Predicted AT-hook DNA-binding family protein	2e-017	87.0	AT1G14490.1
Predicted AT-hook DNA-binding family protein	2e-011	67.4	AT1G20900.1
AT hook motif DNA-binding family protein	7e-050	194	AT1G63470.1
AT hook motif DNA-binding family protein	2e-041	166	AT1G63480.1
Predicted AT-hook DNA-binding family protein	4e-017	85.9	AT1G76500.1

Tomato

AT-hook motif nuclear localized protein 1	2e-055	212	Solyc01g091370.2
AT-hook motif nuclear localized protein 1	2e-057	219	Solyc01g094460.2
AT-hook motif nuclear localized protein 2	1e-064	243	Solyc02g038760.2
AT-hook motif nuclear localized protein 1	5e-057	218	Solyc03g007150.2
AT-hook motif nuclear localized protein 1	4e-053	204	Solyc08g007530.2

Expression

Subcellular location

Unclear

Expression at different developmental stages of three Actinidia species

Period: 20DAP Period: 120DAP Period: 127DAP

Structure

Coils
PDB

Family & Domains

Gene3D

Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2

164-280

3.30.1330.80

Pfam

Domain of unknown function

164-284

PF03479

SUPFAM

AF0104/ALDC/Ptd012-like superfamily

164-280

SSF117856

HAMAP

PIRSF

PRINTS

Prosite

Smart

DNA binding domain with preference for A/T rich regions	84-96	SM00384
DNA binding domain with preference for A/T rich regions	139-151	SM00384
DNA binding domain with preference for A/T rich regions	324-336	SM00384

TIGRFAM

Publications

Crowhurst, R. N., A. P. Gleave, et al. (2008). Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9: 351. PMID: 18655731

Fraser, L. G., G. K. Tsang, et al. (2009). A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes. BMC Genomics 10: 102. PMID: 19284545