Ach04g343631.1 May 08, 2015

Protein name Ach04g343631.1
 
Alternative name Putative DNA-binding protein ESCAROLA
 
Source Annotation
 
Theoretical PI 10.13
 
Molecular weight 35491 Da
 
Gene name Ach04g343631

Function

Description Uncharacterized protein
PMID   
Biological Process
multicellular organismal developmentGO:0007275
Molecular Function  
Cellular Component  

Pathway

KEGG  
COG
KOG
1e-80249At2g33620
1e-50174At2g45850
2e-52179At4g12080
3e-52179At4g25320
9e-51176At5g51590

Interaction

PPIs 0 protein interacts with Ach04g343631.1
Cytoscape Web will replace the contents of this div with your graph.

Sequences

Sequences
MSGSETGGAVMTTREPFTVASHSQPVMQNMRLAYSADGAAVYKPVGSSPP50
PQSAASGGDGTNEGQATGSLMPHNLNVNLGETVKKKRGRPRKYGPDGTMA100
LALMPTPATTAIPQAAGTFSPPSHHTPTSGGPVSPTSSKKGRGRPPGSSK150
KQQMEALGSAGVGFTPHIITVKAGEDVSSKIMSFSQHGPRAVCVLSANGT200
ISNVTLRQAATSGGTATYEGRFEILSLSGSFLLTEVGGQRSRTGGLSVSL250
AGPDGRVLGGCVAGLLTAASPVQVIVGSFFADGRKESKPVNHVEPLSAPP300
KTTPGVGATGASSPPSRGTLSESSGGPGRPLKHRTGACNSNPQGMLSMPW350
R    351
Length 351
Alternative splicing Not at the present moment
Mutagenesis

Similar Protein

Paralog
Putative DNA-binding protein ESCAROLA9e-070260Ach05g264551.2
DNA binding protein, putative1e-058223Ach08g302651.1
Putative DNA-binding protein ESCAROLA1e-058223Ach14g317401.2
DNA binding protein, putative1e-057220Ach18g072071.1
Hypothetical protein1e-060230Ach18g093181.2
GeneBank
putative DNA-binding protein ESCAROLA4.31043e-120356XP_002275328.1
hypothetical protein VITISV_0307929.91505e-119354CAN64876.1
putative lysozyme-like protein1.35041e-113340XP_010932105.1
putative lysozyme-like protein2.18198e-113340XP_008787030.1
putative DNA-binding protein ESCAROLA1.33138e-111334XP_010270554.1
Swiss Prot
Putative DNA-binding protein ESCAROLA7.0778e-1265Q9S7C9
TrEMBL
Putative uncharacterized protein1e-120356D7UDF0
Putative uncharacterized protein1e-119354A5AT53
Uncharacterized protein1e-112335B9GPN9
Uncharacterized protein1e-110330M5WMF5
Uncharacterized protein1e-106319M0SBI9
Arabidopsis
Predicted AT-hook DNA-binding family protein2e-01787.0AT1G14490.1
Predicted AT-hook DNA-binding family protein2e-01167.4AT1G20900.1
AT hook motif DNA-binding family protein7e-050194AT1G63470.1
AT hook motif DNA-binding family protein2e-041166AT1G63480.1
Predicted AT-hook DNA-binding family protein4e-01785.9AT1G76500.1
Tomato
AT-hook motif nuclear localized protein 12e-055212Solyc01g091370.2
AT-hook motif nuclear localized protein 12e-057219Solyc01g094460.2
AT-hook motif nuclear localized protein 21e-064243Solyc02g038760.2
AT-hook motif nuclear localized protein 15e-057218Solyc03g007150.2
AT-hook motif nuclear localized protein 14e-053204Solyc08g007530.2

Expression

Subcellular location Unclear

Expression at different developmental stages of three Actinidia species

Structure

Coils
PDB  

Family & Domains

Gene3D
Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2164-2803.30.1330.80
Pfam
Domain of unknown function164-284PF03479
SUPFAM
AF0104/ALDC/Ptd012-like superfamily164-280SSF117856
HAMAP  
PIRSF  
PRINTS  
Prosite  
Smart
DNA binding domain with preference for A/T rich regions84-96SM00384
DNA binding domain with preference for A/T rich regions139-151SM00384
DNA binding domain with preference for A/T rich regions324-336SM00384
TIGRFAM  

Publications

Crowhurst, R. N., A. P. Gleave, et al. (2008). Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9: 351. PMID: 18655731
Fraser, L. G., G. K. Tsang, et al. (2009). A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes. BMC Genomics 10: 102. PMID: 19284545