Ach18g072071.1 May 08, 2015

Protein name	Ach18g072071.1

Alternative name	DNA binding protein, putative

Source	Annotation

Theoretical PI	9.87

Molecular weight	33803 Da

Gene name	Ach18g072071

Function

Description	Uncharacterized protein
PMID
Biological Process
Molecular Function
Cellular Component

Pathway

KEGG

COG

KOG

7e-43	151	At2g33620
3e-53	179	At2g45850
2e-50	172	At3g61310
8e-44	155	At4g12080
5e-41	147	At4g22770

Interaction

PPIs	0 protein interacts with Ach18g072071.1
Cytoscape Web will replace the contents of this div with your graph.

Sequences CDS download protein download

Sequences

MDRREAMAIS	GSNYYMQRGM	GGSGSGSGPF	QSSNPNVSFQ	SNIGGGSMGS	50
TLSIEPSPVV	SPHGVNVGAP	SFVPSAEPVR	RKRGRPRKYG	PDGAVSLALL	100
PASSTPPVSV	TPTQKRGRGR	PPGTGRKQQL	ASLGEWLSGS	AGMGFTPHVI	150
TIAIGEDITT	KIMSFSQQGP	RAIYIMSANG	SVSTVTLRQP	STSGGSVTYE	200
GHFEIICLSG	SYLVTDNGGP	RGRTGGLSVL	LASPDGRVIG	GGVGGVLLAA	250
SPVQVIVGSF	LWGSSKAKSK	AGAGLDGAGN	LDRQTDDNPA	ALASTPPSQN	300
LTPTSSVGVW	HGSRPMDMQN	AHVDIDLMRE			330

Length

330

Alternative splicing

Not at the present moment

Mutagenesis

Similar Protein

Paralog

DNA binding protein, putative	1e-124	443	Ach00g107361.2
DNA binding protein, putative	1e-124	443	Ach00g107401.2
Putative DNA-binding protein ESCAROLA	3e-063	239	Ach04g343631.1
DNA binding protein, putative	3e-158	554	Ach08g302651.1
Putative DNA-binding protein ESCAROLA	2e-076	282	Ach14g189641.2

GeneBank

DNA binding protein, putative	9.88635e-108	323	XP_002511843.1
hypothetical protein L484_017300	2.16697e-107	323	XP_010105952.1
uncharacterized protein LOC105133650	7.62553e-106	318	XP_011036035.1
uncharacterized protein LOC103343016	1.78248e-105	317	XP_008244908.1
uncharacterized protein LOC100265498	1.12369e-104	316	XP_002272142.1

Swiss Prot

Putative DNA-binding protein ESCAROLA

3.92706e-08

Q9S7C9

TrEMBL

DNA binding protein, putative	1e-108	323	B9RDQ4
Uncharacterized protein	1e-108	323	W9S3E4
Putative uncharacterized protein	1e-105	316	D7UC79
DNA-binding family protein	1e-105	315	B9I8H7
Uncharacterized protein	1e-104	312	A0A067K8P7

Arabidopsis

Predicted AT-hook DNA-binding family protein	5e-011	65.5	AT1G14490.1
AT hook motif DNA-binding family protein	1e-056	216	AT1G63470.1
AT hook motif DNA-binding family protein	4e-056	215	AT1G63480.1
Predicted AT-hook DNA-binding family protein	3e-015	79.3	AT1G76500.1
AT hook motif DNA-binding family protein	1e-053	206	AT2G33620.1

Tomato

AT-hook motif nuclear localized protein 1	9e-053	203	Solyc01g091370.2
AT-hook motif nuclear localized protein 1	6e-109	390	Solyc01g094460.2
AT-hook motif nuclear localized protein 2	9e-054	206	Solyc02g038760.2
AT-hook motif nuclear localized protein 1	1e-051	199	Solyc08g007530.2
AT-hook motif nuclear localized protein 1	3e-078	288	Solyc08g008030.2

Expression

Subcellular location

Unclear

Expression at different developmental stages of three Actinidia species

Period: 20DAP Period: 120DAP Period: 127DAP

Structure

Coils
PDB

Family & Domains

Gene3D

Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2

145-261

3.30.1330.80

Pfam

Domain of unknown function

145-265

PF03479

SUPFAM

AF0104/ALDC/Ptd012-like superfamily

145-263

SSF117856

HAMAP

PIRSF

PRINTS

Prosite

Smart

TIGRFAM

Publications

Crowhurst, R. N., A. P. Gleave, et al. (2008). Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9: 351. PMID: 18655731

Fraser, L. G., G. K. Tsang, et al. (2009). A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes. BMC Genomics 10: 102. PMID: 19284545