Ach14g189641.2 May 08, 2015

Protein name	Ach14g189641.2

Alternative name	Putative DNA-binding protein ESCAROLA

Source	Annotation

Theoretical PI	9.34

Molecular weight	35145.2 Da

Gene name	Ach14g189641

Function

Description	Uncharacterized protein
PMID
Biological Process
Molecular Function
Cellular Component

Pathway

KEGG

COG

KOG

1e-57	192	At1g63470
7e-59	194	At1g63480
4e-60	197	At2g45850
3e-52	177	At3g61310
2e-45	159	At4g12080

Interaction

PPIs	1 protein interacts with Ach14g189641.2
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Sequences CDS download protein download

Sequences

MDGRESMALS	ESSSYYLHRG	VSGSGSASGS	ITHTGFNAPP	DFRPETNPNF	50
SIQPNVRDGS	VGSTFPVQSS	SPSFPHGFNM	GVSSGVPMGE	PGKKKRGRPR	100
KYGPDGTNMS	LGLSPMPTPP	AGSEKRGRGR	PRGSGWKQKL	EPLGEWMNNS	150
AGLAFTPHII	NVAVGEDIAS	NILSFSQQRP	RAVCILSASG	AVSAVTLRQP	200
TSSGNTVTYE	GRFQILCLSG	SYLVAESGGP	RNRTGGISVS	LCSPDGHVIG	250
GGVGGVLIAG	SPVQVVVCSF	VYGGSKSKNK	SMVSPSEEQN	SELQPSEKPD	300
TPASAVSGKN	LTPSSGVWPS	SRPDMRDFQT	EIDLTRG		337

Length

337

Alternative splicing

Not at the present moment

Mutagenesis

Similar Protein

Paralog

DNA binding protein, putative	4e-077	285	Ach00g107361.2
DNA binding protein, putative	4e-077	285	Ach00g107401.2
Putative DNA-binding protein ESCAROLA	4e-057	218	Ach04g343631.1
DNA binding protein, putative	1e-085	313	Ach08g302651.1
Putative DNA-binding protein ESCAROLA	2e-055	213	Ach14g317401.2

GeneBank

putative DNA-binding protein ESCAROLA	9.00003e-128	375	XP_002273061.1
AT hook motif DNA-binding family protein, putative	2.67781e-111	333	XP_007040206.1
uncharacterized protein LOC105157772	7.81298e-110	330	XP_011072550.1
putative DNA-binding protein ESCAROLA	7.88142e-110	329	XP_009364908.1
unnamed protein product	2.26087e-109	327	CBI34677.3

Swiss Prot

Putative DNA-binding protein ESCAROLA

1.25235e-11

Q9S7C9

TrEMBL

Putative uncharacterized protein	1e-128	375	F6HUD0
AT hook motif DNA-binding family protein, putative	1e-111	333	A0A061G6C0
Uncharacterized protein	1e-109	327	M5WUN9
Uncharacterized protein	1e-107	320	K4CIT8
DNA binding protein, putative	1e-103	311	B9RDQ4

Arabidopsis

Predicted AT-hook DNA-binding family protein	8e-016	81.3	AT1G14490.1
AT hook motif DNA-binding family protein	2e-068	256	AT1G63470.1
AT hook motif DNA-binding family protein	9e-065	244	AT1G63480.1
Predicted AT-hook DNA-binding family protein	4e-014	75.9	AT1G76500.1
AT hook motif DNA-binding family protein	3e-052	202	AT2G33620.1

Tomato

AT-hook motif nuclear localized protein 1	2e-048	189	Solyc01g091370.2
AT-hook motif nuclear localized protein 1	4e-082	301	Solyc01g094460.2
AT-hook motif nuclear localized protein 1	1e-049	193	Solyc08g007530.2
AT-hook motif nuclear localized protein 1	2e-104	375	Solyc08g008030.2
AT-hook motif nuclear localized protein 13	9e-051	197	Solyc08g077030.2

Expression

Subcellular location

Unclear

Expression at different developmental stages of three Actinidia species

Period: 20DAP Period: 120DAP Period: 127DAP

Structure

Coils
PDB

Family & Domains

Gene3D

Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2

155-271

3.30.1330.80

Pfam

Domain of unknown function

155-274

PF03479

SUPFAM

AF0104/ALDC/Ptd012-like superfamily

154-272

SSF117856

HAMAP

PIRSF

PRINTS

Prosite

Smart

DNA binding domain with preference for A/T rich regions	93-105	SM00384
DNA binding domain with preference for A/T rich regions	125-137	SM00384

TIGRFAM

Publications

Crowhurst, R. N., A. P. Gleave, et al. (2008). Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9: 351. PMID: 18655731

Fraser, L. G., G. K. Tsang, et al. (2009). A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes. BMC Genomics 10: 102. PMID: 19284545