Ach00g107401.2 May 08, 2015

Protein name	Ach00g107401.2

Alternative name	DNA binding protein, putative

Source	Annotation

Theoretical PI	9.77

Molecular weight	32984.3 Da

Gene name	Ach00g107401

Function

Description	Uncharacterized protein
PMID
Biological Process
Molecular Function
Cellular Component

Pathway

KEGG

COG

KOG

3e-50	172	At1g63470
4e-51	174	At1g63480
3e-53	177	At2g33620
7e-76	237	At2g45850
1e-69	221	At3g61310

Interaction

PPIs	0 protein interacts with Ach00g107401.2
Cytoscape Web will replace the contents of this div with your graph.

Sequences CDS download protein download

Sequences

MALSSSTYYM	QRGITGSPGF	SMLSNPNVSF	QSNIEGNSIG	PTLPIEPPPA	50
ISPHGVNIGA	PSVVPRTQPV	RRKRGRPRKY	GTDGTVSLEL	SPTSATPPWT	100
ISPTQKRGRG	RPPGTGSKQQ	LACLGGWLSG	SAGMGFTPHV	ITVAIGEDIT	150
SKIMSFSQQG	PRAICILSAN	GSVSTVTLRQ	PSTSCGSVTY	EGHFEILCLS	200
GSYLLTGSGA	PPGRSGGLII	SIASPNGHVI	GGGVGGVLIA	ARPVQVIVGS	250
FSWGSPNTKN	KAGEGHEGAG	DLVNRTSDDP	LVRPSASPGQ	NLTPTSSVGV	300
WPGSRPMVQN	AHVDIDLMRE				320

Length

320

Alternative splicing

There exists

Mutagenesis

Similar Protein

Paralog

DNA binding protein, putative	0.0	635	Ach00g107361.2
Putative DNA-binding protein ESCAROLA	1e-057	220	Ach04g343631.1
DNA binding protein, putative	4e-126	447	Ach08g302651.1
Putative DNA-binding protein ESCAROLA	5e-070	261	Ach14g189641.2
Putative DNA-binding protein ESCAROLA	4e-053	204	Ach14g317401.2

GeneBank

DNA binding protein, putative	1.60881e-140	406	XP_002511843.1
uncharacterized protein LOC105133650	2.82306e-140	405	XP_011036035.1
AT hook motif DNA-binding family protein isoform 1	3.771e-140	405	XP_007051832.1
hypothetical protein JCGZ_14416	1.12797e-138	401	KDP28645.1
uncharacterized protein LOC100265498	1.74057e-136	396	XP_002272142.1

Swiss Prot

Putative DNA-binding protein ESCAROLA

1.21344e-11

Q9S7C9

TrEMBL

DNA binding protein, putative	1e-141	406	B9RDQ4
AT hook motif DNA-binding family protein isoform 1	1e-140	405	A0A061DV88
Uncharacterized protein	1e-139	401	A0A067K8P7
Putative uncharacterized protein	1e-137	396	D7UC79
DNA-binding family protein	1e-135	392	B9I8H7

Arabidopsis

Predicted AT-hook DNA-binding family protein	1e-012	70.9	AT1G14490.1
AT hook motif DNA-binding family protein	9e-052	200	AT1G63470.1
AT hook motif DNA-binding family protein	2e-048	189	AT1G63480.1
Predicted AT-hook DNA-binding family protein	8e-015	78.2	AT1G76500.1
AT hook motif DNA-binding family protein	7e-050	194	AT2G33620.1

Tomato

AT-hook motif nuclear localized protein 1	4e-046	181	Solyc01g091370.2
AT-hook motif nuclear localized protein 1	6e-091	330	Solyc01g094460.2
AT-hook motif nuclear localized protein 2	9e-049	190	Solyc02g038760.2
AT-hook motif nuclear localized protein 1	5e-073	270	Solyc08g008030.2
AT-hook motif nuclear localized protein 13	4e-051	197	Solyc08g077030.2

Expression

Subcellular location

Chloroplast

Expression at different developmental stages of three Actinidia species

Period: 20DAP Period: 120DAP Period: 127DAP

Structure

Coils
PDB

Family & Domains

Gene3D

Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2

136-253

3.30.1330.80

Pfam

SUPFAM

AF0104/ALDC/Ptd012-like superfamily

136-253

SSF117856

HAMAP

PIRSF

PRINTS

Prosite

Smart

DNA binding domain with preference for A/T rich regions	71-83	SM00384
DNA binding domain with preference for A/T rich regions	106-118	SM00384

TIGRFAM

Publications

Crowhurst, R. N., A. P. Gleave, et al. (2008). Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9: 351. PMID: 18655731

Fraser, L. G., G. K. Tsang, et al. (2009). A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes. BMC Genomics 10: 102. PMID: 19284545