Ach03g010881.1 May 08, 2015

Protein name Ach03g010881.1
 
Alternative name Putative DNA-binding protein ESCAROLA
 
Source Annotation
 
Theoretical PI 9.56
 
Molecular weight 34119.4 Da
 
Gene name Ach03g010881

Function

Description Uncharacterized protein
PMID   
Biological Process  
Molecular Function  
Cellular Component  

Pathway

KEGG  
COG
KOG
1e-55186At4g12080
3e-57189At4g22770
5e-61201At4g25320
6e-51175At5g51590
1e-54185At5g62260

Interaction

PPIs 0 protein interacts with Ach03g010881.1
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Sequences

Sequences
MEGQEGINNSYGVTPKREEAPEIHRAPVTDIPNQLTGSAPPPVTPVSAAA50
SGTEGKKKRGRPRKYAPDGTLSPTPISASIPLTGDFSAWKQGRGRPIDSF100
KKKDKLVFETPGEQVAYSVGANFTPHVITVNAGEDVTMKVISFSQQGSRA150
ICILSANGAISNVTLRQPNSSGGTLTYEGRFEILSLTGSFMPTFSGGTKS200
RSGGMSVSLAGPDGRVLGGGLAGLLVAAGPVQVVVGSFLPGHQQKQKQKP250
KKQKFQRTAFFSPTVANHNSEEGTEGGCGGPKPNLTPPSSFLGDNMASPN300
SVHVPKNLATENDISLPRSESPRTEV  326
Length 326
Alternative splicing Not at the present moment
Mutagenesis

Similar Protein

Paralog
ACT domain-containing protein ACR4e-071265Ach00g479701.2
Putative lysozyme-like protein1e-056216Ach02g086691.2
Putative DNA-binding protein ESCAROLA1e-138489Ach02g249941.1
Putative DNA-binding protein ESCAROLA6e-057218Ach04g343631.1
Putative DNA-binding protein ESCAROLA1e-075279Ach14g317401.2
GeneBank
unnamed protein product2.06002e-105317CBI24514.3
unnamed protein product5.3557e-103311CDP05296.1
uncharacterized protein LOC1002549411.94059e-101308XP_010662378.1
uncharacterized protein LOC1025789799.22423e-99300XP_006348064.1
putative DNA-binding protein ESCAROLA6.81172e-96293XP_010062017.1
Swiss Prot
Putative DNA-binding protein ESCAROLA1.01342e-0958Q9S7C9
TrEMBL
Coffea canephora DH200=94 genomic scaffold, scaffold_151e-103311A0A068U9Z9
Putative uncharacterized protein1e-102308F6HAK6
Uncharacterized protein3e-99300M1D282
Uncharacterized protein3e-96293A0A059DK94
Putative uncharacterized protein3e-94306A5BL48
Arabidopsis
Predicted AT-hook DNA-binding family protein5e-01889.0AT1G14490.1
AT hook motif DNA-binding family protein2e-043173AT1G63470.1
AT hook motif DNA-binding family protein1e-037153AT1G63480.1
Predicted AT-hook DNA-binding family protein6e-01681.6AT1G76500.1
AT hook motif DNA-binding family protein2e-050196AT2G33620.1
Tomato
AT-hook motif nuclear localized protein 11e-069259Solyc01g091370.2
AT-hook motif nuclear localized protein 15e-104374Solyc03g007150.2
AT-hook motif nuclear localized protein 35e-095343Solyc06g035430.2
AT-hook motif nuclear localized protein 12e-069259Solyc08g007530.2
AT-hook motif nuclear localized protein 135e-050194Solyc08g077030.2

Expression

Subcellular location Unclear

Expression at different developmental stages of three Actinidia species

Structure

Coils
PDB  

Family & Domains

Gene3D
Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2123-2483.30.1330.80
Pfam
AT hook motif56-68PF02178
AT hook motif90-96PF02178
Domain of unknown function123-243PF03479
SUPFAM
AF0104/ALDC/Ptd012-like superfamily122-246SSF117856
HAMAP  
PIRSF  
PRINTS  
Prosite  
Smart  
TIGRFAM  

Publications

Crowhurst, R. N., A. P. Gleave, et al. (2008). Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9: 351. PMID: 18655731
Fraser, L. G., G. K. Tsang, et al. (2009). A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes. BMC Genomics 10: 102. PMID: 19284545