Ach02g249941.1 May 08, 2015

Protein name	Ach02g249941.1

Alternative name	Putative DNA-binding protein ESCAROLA

Source	Annotation

Theoretical PI	9.56

Molecular weight	34340.6 Da

Gene name	Ach02g249941

Function

Description	Uncharacterized protein
PMID
Biological Process
Molecular Function
Cellular Component

Pathway

KEGG

COG

KOG

9e-51	173	At4g12080
5e-50	171	At4g22770
4e-55	186	At4g25320
2e-43	155	At5g51590
2e-46	164	At5g62260

Interaction

PPIs	0 protein interacts with Ach02g249941.1
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Sequences CDS download protein download

Sequences

MEGQEGINNS	YGVTPKREEA	PEIHRPPATE	NPNQLTGSAP	PSAATEATPV	50
SAAAAGTAGK	KKRGRPRKYA	PDGTPLALSP	MPISASIPLT	GNFSAWKQGR	100
GRPLDSFKKK	HKLLFETPGE	RVAYSVGANF	TPHVITVNAG	EDVTMKVISF	150
SQQGSRAICI	LSANGAISNV	TLRQPNSSGG	TLTYEGRFEI	LSLTGSFMPT	200
FSGGTKSRSG	GMSVSLAGPD	GRVLGGGLAG	LLVAAGPVQV	VIGSFLPGHQ	250
QEQKPKKQKF	EGTAIFSPSV	ANHNSGEGTE	GGYGGPKPNL	TPPSSFHGDN	300
TASPNTVHIP	KNLATENVVS	LPRSESPHTE	V		331

Length

331

Alternative splicing

Not at the present moment

Mutagenesis

Similar Protein

Paralog

ACT domain-containing protein ACR	2e-074	276	Ach00g479701.2
Putative lysozyme-like protein	6e-055	211	Ach02g086691.2
Putative DNA-binding protein ESCAROLA	4e-143	504	Ach03g010881.1
Putative DNA-binding protein ESCAROLA	8e-059	224	Ach04g343631.1
Putative DNA-binding protein ESCAROLA	8e-079	290	Ach14g317401.2

GeneBank

unnamed protein product	7.2182e-101	305	CBI24514.3
unnamed protein product	8.87559e-101	306	CDP05296.1
uncharacterized protein LOC100254941	1.37912e-97	298	XP_010662378.1
hypothetical protein VITISV_039795	9.08088e-90	295	CAN77019.1
uncharacterized protein LOC105179274	1.6422e-89	275	XP_011101191.1

Swiss Prot

Putative DNA-binding protein ESCAROLA

1.25122e-09

Q9S7C9

TrEMBL

Coffea canephora DH200=94 genomic scaffold, scaffold_15	1e-101	306	A0A068U9Z9
Putative uncharacterized protein	5e-98	298	F6HAK6
Putative uncharacterized protein	3e-90	295	A5BL48
Uncharacterized protein	4e-89	275	A0A059DK94
Uncharacterized protein	5e-88	271	M1D282

Arabidopsis

Predicted AT-hook DNA-binding family protein	2e-018	90.5	AT1G14490.1
AT hook motif DNA-binding family protein	5e-045	178	AT1G63470.1
AT hook motif DNA-binding family protein	8e-037	150	AT1G63480.1
Predicted AT-hook DNA-binding family protein	9e-016	81.3	AT1G76500.1
AT hook motif DNA-binding family protein	4e-051	198	AT2G33620.1

Tomato

AT-hook motif nuclear localized protein 1	5e-070	261	Solyc01g091370.2
AT-hook motif nuclear localized protein 1	3e-104	374	Solyc03g007150.2
AT-hook motif nuclear localized protein 3	2e-100	361	Solyc06g035430.2
AT-hook motif nuclear localized protein 1	4e-075	278	Solyc08g007530.2
AT-hook motif nuclear localized protein 1	2e-048	189	Solyc08g008030.2

Expression

Subcellular location

Unclear

Expression at different developmental stages of three Actinidia species

Period: 20DAP Period: 120DAP Period: 127DAP

Structure

Coils
PDB

Family & Domains

Gene3D

Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2

130-258

3.30.1330.80

Pfam

AT hook motif	60-72	PF02178
AT hook motif	97-103	PF02178
Domain of unknown function	130-250	PF03479

SUPFAM

AF0104/ALDC/Ptd012-like superfamily

129-252

SSF117856

HAMAP

PIRSF

PRINTS

Prosite

Smart

TIGRFAM

Publications

Crowhurst, R. N., A. P. Gleave, et al. (2008). Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9: 351. PMID: 18655731

Fraser, L. G., G. K. Tsang, et al. (2009). A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes. BMC Genomics 10: 102. PMID: 19284545