Ach00g089451.2 May 08, 2015

Protein name	Ach00g089451.2

Alternative name	Putative DNA-binding protein ESCAROLA

Source	Annotation

Theoretical PI	9.3

Molecular weight	21350.3 Da

Gene name	Ach00g089451

Function

Description	Uncharacterized protein
PMID
Biological Process
Molecular Function
Cellular Component

Pathway

KEGG

COG

KOG

1e-37	134	At4g00200
1e-49	166	At4g12080
9e-37	132	At4g22770
1e-30	117	At4g25320
8e-31	118	At5g62260

Interaction

PPIs	0 protein interacts with Ach00g089451.2
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Sequences CDS download protein download

Sequences

MLDILQSILG	KRCGRASGFK	DVTMKVISFS	QQGPRAICIL	SANGVISNVT	50
LRQPDSCGGT	LTYEGRFEIL	SLTGSFMPAE	SGGMRNRSGG	MSVSLASPDG	100
RVVGGGVAGL	LVAAGPVQIV	VGSFLAGNQH	EQKPKKQKTE	SATTALPTAA	150
DPISSVEVDK	TYGGPETAAP	TKPIFSSSSF	RGDNWSSLPP	ELRNKRTDIN	200
VALHG					205

Length

205

Alternative splicing

Not at the present moment

Mutagenesis

Similar Protein

Paralog

ACT domain-containing protein ACR	2e-105	377	Ach00g479701.2
Putative lysozyme-like protein	6e-041	163	Ach02g086691.2
Putative DNA-binding protein ESCAROLA	1e-040	162	Ach02g249941.1
Putative DNA-binding protein ESCAROLA	1e-040	162	Ach03g010881.1
Putative DNA-binding protein ESCAROLA	3e-041	164	Ach04g343631.1

GeneBank

uncharacterized protein LOC100244375	1.30535e-70	224	XP_002274756.1
hypothetical protein VITISV_031923	3.86312e-69	223	CAN62363.1
unnamed protein product	4.78824e-66	209	CBI34816.3
DNA-binding family protein, partial	2.68296e-65	208	XP_006368725.1
hypothetical protein JCGZ_20738	6.9086e-65	208	KDP25582.1

Swiss Prot

Putative DNA-binding protein ESCAROLA

6.08015e-07

Q9S7C9

TrEMBL

Putative uncharacterized protein	1e-69	223	A5ADV9
Putative uncharacterized protein	8e-66	210	F6HUL3
DNA-binding family protein	1e-65	208	U5GT10
Uncharacterized protein	3e-65	208	A0A067JNW8
AT-hook motif nuclear-localized protein 1 isoform 2	4e-65	208	A0A061GBU0

Arabidopsis

Predicted AT-hook DNA-binding family protein	3e-013	72.0	AT1G14490.1
AT hook motif DNA-binding family protein	2e-030	128	AT1G63470.1
AT hook motif DNA-binding family protein	7e-028	120	AT1G63480.1
Predicted AT-hook DNA-binding family protein	1e-012	69.7	AT1G76500.1
AT hook motif DNA-binding family protein	9e-038	153	AT2G33620.1

Tomato

AT-hook motif nuclear localized protein 1	5e-053	203	Solyc01g091370.2
AT-hook motif nuclear localized protein 1	5e-053	203	Solyc03g007150.2
AT-hook motif nuclear localized protein 3	3e-046	181	Solyc06g035430.2
AT-hook motif nuclear localized protein 1	3e-057	217	Solyc08g007530.2
AT-hook motif nuclear localized protein 1	6e-035	143	Solyc08g008030.2

Expression

Subcellular location

Unclear

Expression at different developmental stages of three Actinidia species

Period: 20DAP Period: 120DAP Period: 127DAP

Structure

Coils
PDB

Family & Domains

Gene3D

Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2

21-138

3.30.1330.80

Pfam

Domain of unknown function

14-129

PF03479

SUPFAM

AF0104/ALDC/Ptd012-like superfamily

20-127

SSF117856

HAMAP

PIRSF

PRINTS

Prosite

Smart

TIGRFAM

Publications

Crowhurst, R. N., A. P. Gleave, et al. (2008). Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9: 351. PMID: 18655731

Fraser, L. G., G. K. Tsang, et al. (2009). A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes. BMC Genomics 10: 102. PMID: 19284545